Rat Entrez Genes (EG).

Description

An R object that contains Entrez Gene information for the rat. This data is prepared based on ftp://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz.

Usage

org.Rn.eg <- dRDataLoader(RData = "org.Rn.eg")

Value

an object of class "EG", a list with following components:

  • gene_info: a matrix of nGene X 7 containing gene information, where nGene is the number of Entrez Genes, and the 7 columns are "GeneID", "Symbol", "description", "chromosome", "map_location", "Synonyms" and "dbXrefs"

References

Maglott et al. (2011) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res, 39:D52-57.

Examples

org.Rn.eg <- dRDataLoader(RData='org.Rn.eg')
'org.Rn.eg' (from https://github.com/hfang-bristol/RDataCentre/blob/master/dnet/1.0.7/org.Rn.eg.RData?raw=true) has been loaded into the working environment (at 2017-03-27 20:03:03)
names(org.Rn.eg)
[1] "gene_info"
org.Rn.eg$gene_info[1:5,]
GeneID Symbol description 24152 24152 Asip agouti signaling protein 24153 24153 A2m alpha-2-macroglobulin 24157 24157 Acaa1a acetyl-CoA acyltransferase 1 24158 24158 Acadm acyl-CoA dehydrogenase, C-4 to C-12 straight chain 24159 24159 Acly ATP citrate lyase chromosome map_location Synonyms 24152 3 3q42 - 24153 4 4q42 A2MAC1|A2m1|A2maa|A2mb|Mam 24157 8 8q32 Acaa|Acaa1|Pktaa 24158 2 2q45 MCAD 24159 10 10q32.1 ACL|Clatp dbXrefs 24152 RGD:2003 24153 RGD:2004|Ensembl:ENSRNOG00000028896 24157 RGD:67379|Ensembl:ENSRNOG00000032908 24158 RGD:2012|Ensembl:ENSRNOG00000009845 24159 RGD:2018|Ensembl:ENSRNOG00000016924