Mouse Entrez Genes (EG).

Description

An R object that contains Entrez Gene information for the mouse. This data is prepared based on ftp://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz.

Usage

org.Mm.eg <- dRDataLoader(RData = "org.Mm.eg")

Value

an object of class "EG", a list with following components:

  • gene_info: a matrix of nGene X 7 containing gene information, where nGene is the number of Entrez Genes, and the 7 columns are "GeneID", "Symbol", "description", "chromosome", "map_location", "Synonyms" and "dbXrefs"

References

Maglott et al. (2011) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res, 39:D52-57.

Examples

org.Mm.eg <- dRDataLoader(RData='org.Mm.eg')
'org.Mm.eg' (from https://github.com/hfang-bristol/RDataCentre/blob/master/dnet/1.0.7/org.Mm.eg.RData?raw=true) has been loaded into the working environment (at 2017-03-27 20:02:18)
names(org.Mm.eg)
[1] "gene_info"
org.Mm.eg$gene_info[1:5,]
GeneID Symbol description 11287 11287 Pzp pregnancy zone protein 11298 11298 Aanat arylalkylamine N-acetyltransferase 11302 11302 Aatk apoptosis-associated tyrosine kinase 11303 11303 Abca1 ATP-binding cassette, sub-family A (ABC1), member 1 11304 11304 Abca4 ATP-binding cassette, sub-family A (ABC1), member 4 chromosome map_location Synonyms 11287 6 6 63.02 cM A1m|A2m|AI893533|MAM 11298 11 11 81.43 c AA-NAT|Nat-2|Nat4|Snat 11302 11 11|11 E2 AATYK|aatyk1|mKIAA0641 11303 4 4 28.57 cM ABC-1|Abc1 11304 3 3 G1|3 52. AW050280|Abc10|Abcr|D430003I15Rik|RmP dbXrefs 11287 MGI:MGI:87854|Ensembl:ENSMUSG00000030359|Vega:OTTMUSG00000022212 11298 MGI:MGI:1328365|Ensembl:ENSMUSG00000020804|Vega:OTTMUSG00000003949 11302 MGI:MGI:1197518|Ensembl:ENSMUSG00000025375|Vega:OTTMUSG00000004053 11303 MGI:MGI:99607|Ensembl:ENSMUSG00000015243|Vega:OTTMUSG00000007157 11304 MGI:MGI:109424|Ensembl:ENSMUSG00000028125|Vega:OTTMUSG00000029911