Annotations of Human Entrez Genes (EG) by DGIdb categories.

Description

An R object that contains associations between DGIdb categories and Human Entrez Genes. This data is prepared based on http://dgidb.genome.wustl.edu/downloads/categories.tsv.

Usage

org.Hs.egDGIdb <- dRDataLoader(RData = "org.Hs.egDGIdb")

Value

an object of class "GS", a list with following components:

  • set_info: a matrix of nSet X 4 containing gene set information, where nSet is the number of gene sets (i.e. terms), and the 4 columns are "setID" (i.e. "Term ID"), "name" (i.e. "Term Name"), "namespace" and "distance"
  • gs: a list of gene sets, each storing gene members thereof. Always, gene sets are identified by "setID" and gene members identified by "Entrez ID"

References

Griffith et al. (2013) DGIdb: mining the druggable genome. Nature methods, 10(12):1209-10.

Examples

org.Hs.egDGIdb <- dRDataLoader(RData='org.Hs.egDGIdb')
'org.Hs.egDGIdb' (from https://github.com/hfang-bristol/RDataCentre/blob/master/dnet/1.0.7/org.Hs.egDGIdb.RData?raw=true) has been loaded into the working environment (at 2017-03-27 20:01:30)
names(org.Hs.egDGIdb)
[1] "gs" "set_info"