Human Entrez Genes (EG).

Description

An R object that contains Entrez Gene information for the human. This data is prepared based on ftp://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz.

Usage

org.Hs.eg <- dRDataLoader(RData = "org.Hs.eg")

Value

an object of class "EG", a list with following components:

  • gene_info: a matrix of nGene X 7 containing gene information, where nGene is the number of Entrez Genes, and the 7 columns are "GeneID", "Symbol", "description", "chromosome", "map_location", "Synonyms" and "dbXrefs"

References

Maglott et al. (2011) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res, 39:D52-57.

Examples

# not run org.Hs.eg <- dRDataLoader(RData='org.Hs.eg')
'org.Hs.eg' (from https://github.com/hfang-bristol/RDataCentre/blob/master/dnet/1.0.7/org.Hs.eg.RData?raw=true) has been loaded into the working environment (at 2017-03-27 20:01:28)
names(org.Hs.eg)
[1] "gene_info"
org.Hs.eg$gene_info[1:5,]
GeneID Symbol description 1 1 A1BG alpha-1-B glycoprotein 2 2 A2M alpha-2-macroglobulin 3 3 A2MP1 alpha-2-macroglobulin pseudogene 1 9 9 NAT1 N-acetyltransferase 1 (arylamine N-acetyltransferase) 10 10 NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase) chromosome map_location Synonyms 1 19 19q13.4 A1B|ABG|GAB|HYST2477 2 12 12p13.31 A2MD|CPAMD5|FWP007|S863-7 3 12 12p13.31 A2MP 9 8 8p22 AAC1|MNAT|NAT-1|NATI 10 8 8p22 AAC2|NAT-2|PNAT dbXrefs 1 MIM:138670|HGNC:HGNC:5|Ensembl:ENSG00000121410|HPRD:00726|Vega:OTTHUMG00000183507 2 MIM:103950|HGNC:HGNC:7|Ensembl:ENSG00000175899|HPRD:00072|Vega:OTTHUMG00000150267 3 HGNC:HGNC:8|Ensembl:ENSG00000256069 9 MIM:108345|HGNC:HGNC:7645|Ensembl:ENSG00000171428|HPRD:00149|Vega:OTTHUMG00000097001 10 MIM:612182|HGNC:HGNC:7646|Ensembl:ENSG00000156006|HPRD:02000|Vega:OTTHUMG00000130826