Annotations of Chicken Entrez Genes (EG) by Gene Ontology Biological Process (GOBP).


An R object that contains associations between Gene Ontology Biological Process terms and Chicken Entrez Genes. This data is prepared based on and


org.Gg.egGOBP <- dRDataLoader(RData = "org.Gg.egGOBP")


an object of class "GS", a list with following components:

  • set_info: a matrix of nSet X 4 containing gene set information, where nSet is the number of gene sets (i.e. GOBP terms), and the 4 columns are "setID" (i.e. "Term ID"), "name" (i.e. "Term Name"), "namespace" and "distance"
  • gs: a list of gene sets, each storing gene members thereof. Always, gene sets are identified by "setID" and gene members identified by "Entrez ID"


Maglott et al. (2011) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res, 39:D52-57.

Ashburner et al. (2000) Gene ontology: tool for the unification of biology. Nat Genet, 25:25-29.


org.Gg.egGOBP <- dRDataLoader(RData='org.Gg.egGOBP')
'org.Gg.egGOBP' (from has been loaded into the working environment (at 2018-01-19 12:38:04)
[1] "gs" "set_info"