Chicken Entrez Genes (EG).

Description

An R object that contains Entrez Gene information for the chicken. This data is prepared based on ftp://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz.

Usage

org.Gg.eg <- dRDataLoader(RData = "org.Gg.eg")

Value

an object of class "EG", a list with following components:

  • gene_info: a matrix of nGene X 7 containing gene information, where nGene is the number of Entrez Genes, and the 7 columns are "GeneID", "Symbol", "description", "chromosome", "map_location", "Synonyms" and "dbXrefs"

References

Maglott et al. (2011) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res, 39:D52-57.

Examples

org.Gg.eg <- dRDataLoader(RData='org.Gg.eg')
'org.Gg.eg' (from https://github.com/hfang-bristol/RDataCentre/blob/master/dnet/1.0.7/org.Gg.eg.RData?raw=true) has been loaded into the working environment (at 2017-03-27 20:01:03)
names(org.Gg.eg)
[1] "gene_info"
org.Gg.eg$gene_info[1:5,]
GeneID Symbol description chromosome 373854 373854 TENM2 teneurin transmembrane protein 2 13 373885 373885 FZD10 frizzled class receptor 10 15 373886 373886 FZD9 frizzled class receptor 9 19 373887 373887 FZD4 frizzled class receptor 4 1 373888 373888 TFAM transcription factor A, mitochondrial 6 map_location Synonyms dbXrefs 373854 - ODZ2|TEN2 CGNC:1242|Ensembl:ENSGALG00000001768 373885 - cFz-10 CGNC:48941|Ensembl:ENSGALG00000002652 373886 - Fz-9|cFz-9 CGNC:538 373887 - FZ-4 CGNC:12957|Ensembl:ENSGALG00000017242 373888 - - CGNC:1948|Ensembl:ENSGALG00000002703