Fruitfly Entrez Genes (EG).

Description

An R object that contains Entrez Gene information for the fruitfly. This data is prepared based on ftp://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz.

Usage

org.Dm.eg <- dRDataLoader(RData = "org.Dm.eg")

Value

an object of class "EG", a list with following components:

  • gene_info: a matrix of nGene X 7 containing gene information, where nGene is the number of Entrez Genes, and the 7 columns are "GeneID", "Symbol", "description", "chromosome", "map_location", "Synonyms" and "dbXrefs"

References

Maglott et al. (2011) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res, 39:D52-57.

Examples

org.Dm.eg <- dRDataLoader(RData='org.Dm.eg')
'org.Dm.eg' (from https://github.com/hfang-bristol/RDataCentre/blob/master/dnet/1.0.7/org.Dm.eg.RData?raw=true) has been loaded into the working environment (at 2017-03-27 20:00:41)
names(org.Dm.eg)
[1] "gene_info"
org.Dm.eg$gene_info[1:5,]
GeneID Symbol description chromosome 30970 30970 CG3038 CG3038 gene product from transcript CG3038-RC X 30971 30971 G9a CG2995 gene product from transcript CG2995-RB X 30972 30972 CG13377 CG13377 gene product from transcript CG13377-RB X 30973 30973 cin cinnamon X 30975 30975 ewg erect wing X map_location 30970 1A1-1A1 30971 1A1-1A1 30972 1A1-1A1 30973 1A1-1A1 30975 1A1-1A1|1- Synonyms 30970 DmelCG3038|EG:BACR37P7.1 30971 CG2995|DmelCG2995|EG:BACR37P7.2|EHMT|cab65850 G9a Dm|dG9a 30972 BG01596|DmelCG13377|EG:BACR37P7.9 30973 CG2945|CIN|DmelCG2945|EG:BACR37P7.3|fs(1)M50|l(1)1Ae|l(1)G0142 30975 CG3114|DmelCG3114|EC3|EG:BACR37P7.7|EWG|Ewg|NRF-1|l(1)1Ag|l(1)DA659|l(1)EC3|l(1)EC3f|l(1)VA720|l[EC3 dbXrefs 30970 FLYBASE:FBgn0040373 30971 FLYBASE:FBgn0040372 30972 FLYBASE:FBgn0261446 30973 FLYBASE:FBgn0000316 30975 FLYBASE:FBgn0005427