Zebrafish Entrez Genes (EG).

Description

An R object that contains Entrez Gene information for the zebrafish. This data is prepared based on ftp://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz.

Usage

org.Da.eg <- dRDataLoader(RData = "org.Da.eg")

Value

an object of class "EG", a list with following components:

  • gene_info: a matrix of nGene X 7 containing gene information, where nGene is the number of Entrez Genes, and the 7 columns are "GeneID", "Symbol", "description", "chromosome", "map_location", "Synonyms" and "dbXrefs"

References

Maglott et al. (2011) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res, 39:D52-57.

Examples

org.Da.eg <- dRDataLoader(RData='org.Da.eg')
'org.Da.eg' (from https://github.com/hfang-bristol/RDataCentre/blob/master/dnet/1.0.7/org.Da.eg.RData?raw=true) has been loaded into the working environment (at 2017-03-27 20:00:14)
names(org.Da.eg)
[1] "gene_info"
org.Da.eg$gene_info[1:5,]
GeneID Symbol description chromosome 30037 30037 tnc tenascin C 5 30038 30038 sox19a SRY (sex determining region Y)-box 19a 5 30065 30065 hug HuG 11 30066 30066 meis2b Meis homeobox 2b 20 30067 30067 chico chico 2 map_location Synonyms 30037 - tenc|wu:fk04d02 30038 - cb799|fc66c01|sox19|wu:fc66c01 30065 - fb72d01|fk65g02|wu:fb72d01|wu:fk65g02 30066 - meis2|meis2.1 30067 - - dbXrefs 30037 ZFIN:ZDB-GENE-980526-104|Ensembl:ENSDARG00000021948|Vega:OTTDARG00000032698 30038 ZFIN:ZDB-GENE-980526-102|Ensembl:ENSDARG00000010770|Vega:OTTDARG00000016206 30065 ZFIN:ZDB-GENE-000210-17|Ensembl:ENSDARG00000101744 30066 ZFIN:ZDB-GENE-000210-23|Ensembl:ENSDARG00000077840|Vega:OTTDARG00000032200 30067 ZFIN:ZDB-GENE-000210-28|Ensembl:ENSDARG00000019588