C.elegans Entrez Genes (EG).

Description

An R object that contains Entrez Gene information for the c.elegans. This data is prepared based on ftp://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz.

Usage

org.Ce.eg <- dRDataLoader(RData = "org.Ce.eg")

Value

an object of class "EG", a list with following components:

  • gene_info: a matrix of nGene X 7 containing gene information, where nGene is the number of Entrez Genes, and the 7 columns are "GeneID", "Symbol", "description", "chromosome", "map_location", "Synonyms" and "dbXrefs"

References

Maglott et al. (2011) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res, 39:D52-57.

Examples

org.Ce.eg <- dRDataLoader(RData='org.Ce.eg')
'org.Ce.eg' (from https://github.com/hfang-bristol/RDataCentre/blob/master/dnet/1.0.7/org.Ce.eg.RData?raw=true) has been loaded into the working environment (at 2017-03-27 19:59:50)
names(org.Ce.eg)
[1] "gene_info"
org.Ce.eg$gene_info[1:5,]
GeneID Symbol description chromosome map_location Synonyms dbXrefs 171590 171590 homt-1 HOMT-1 I - - - 171591 171591 nlp-40 NLP-40 I - - - 171592 171592 rcor-1 RCOR-1 I - - - 171593 171593 sesn-1 SESN-1 I - - - 171594 171594 pgs-1 PGS-1 I - - -