Description

An R object that contains Entrez Gene information for the c.elegans. This data is prepared based on ftp://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz.

Usage

org.Ce.eg <- dRDataLoader(RData = "org.Ce.eg")

Value

an object of class "EG", a list with following components:

• gene_info: a matrix of nGene X 7 containing gene information, where nGene is the number of Entrez Genes, and the 7 columns are "GeneID", "Symbol", "description", "chromosome", "map_location", "Synonyms" and "dbXrefs"

References

Maglott et al. (2011) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res, 39:D52-57.

Examples

org.Ce.eg <- dRDataLoader(RData='org.Ce.eg')

'org.Ce.eg' (from https://github.com/hfang-bristol/RDataCentre/blob/master/dnet/1.0.7/org.Ce.eg.RData?raw=true) has been loaded into the working environment (at 2018-01-19 12:37:27)
names(org.Ce.eg)

[1] "gene_info"

org.Ce.eg$gene_info[1:5,]

       GeneID Symbol description chromosome map_location Synonyms dbXrefs
171590 171590 homt-1      HOMT-1          I            -        -       -
171591 171591 nlp-40      NLP-40          I            -        -       -
171592 171592 rcor-1      RCOR-1          I            -        -       -
171593 171593 sesn-1      SESN-1          I            -        -       -
171594 171594  pgs-1       PGS-1          I            -        -       -