Arabidopsis Entrez Genes (EG).

Description

An R object that contains Entrez Gene information for the arabidopsis. This data is prepared based on ftp://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz.

Usage

org.At.eg <- dRDataLoader(RData = "org.At.eg")

Value

an object of class "EG", a list with following components:

  • gene_info: a matrix of nGene X 7 containing gene information, where nGene is the number of Entrez Genes, and the 7 columns are "GeneID", "Symbol", "description", "chromosome", "map_location", "Synonyms" and "dbXrefs"

References

Maglott et al. (2011) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res, 39:D52-57.

Examples

org.At.eg <- dRDataLoader(RData='org.At.eg')
'org.At.eg' (from https://github.com/hfang-bristol/RDataCentre/blob/master/dnet/1.0.7/org.At.eg.RData?raw=true) has been loaded into the working environment (at 2017-03-27 19:59:19)
names(org.At.eg)
[1] "gene_info"
org.At.eg$gene_info[1:5,]
GeneID Symbol description chromosome map_location 814566 814566 rrn26 26S ribosomal RNA protein MT - 814568 814568 nad9 NADH dehydrogenase subunit 9 MT - 814569 814569 rpl16 ribosomal protein L16 MT - 814570 814570 rps3 ribosomal protein S3 MT - 814571 814571 tRNA-Lys tRNA MT - Synonyms dbXrefs 814566 - - 814568 - - 814569 - - 814570 - - 814571 - -