Description

This dataset contains data obtained from ImmunoBase. For each of 20 immune-diseases, its associated variants, regions, and nearby genes (within 500kb) are stored.

Usage

ImmunoBase <- dRDataLoader(RData.customised = "ImmunoBase")

Value

a list with 5 components:

• disease: a character of disease name
• variants: an object of class "GRanges", storing genomic locations of associated variants plus their significance and odd ratios
• regions: an object of class "GRanges", storing genomic locations of associated regions
• genes_variants: a named vector for nearby genes within 500kb of associated variants; the element names are gene symbols, the element values for the shortest distance to all associated variants
• genes_regions: a named vector for nearby genes within 500kb of associated regions; the element names are gene symbols, the element values for the shortest distance to all associated regions

Examples

ImmunoBase <- dRDataLoader(RData.customised='ImmunoBase')

Error in dRDataLoader(RData.customised = "ImmunoBase"): unused argument (RData.customised = "ImmunoBase")
names(ImmunoBase)

Error in eval(expr, envir, enclos): object 'ImmunoBase' not found
str(ImmunoBase$AS)

Error in str(ImmunoBase$AS): object 'ImmunoBase' not found
ImmunoBase$AS$disease

Error in eval(expr, envir, enclos): object 'ImmunoBase' not found
ImmunoBase$AS$variants

Error in eval(expr, envir, enclos): object 'ImmunoBase' not found
head(ImmunoBase$AS$genes_variants)

Error in head(ImmunoBase$AS$genes_variants): object 'ImmunoBase' not found
head(ImmunoBase$AS$genes_regions)

Error in head(ImmunoBase$AS$genes_regions): object 'ImmunoBase' not found